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Sophie

distrib > Mandriva > 2008.1 > x86_64 > media > contrib-release > by-pkgid > d3e234e42b1aa42e3b399775b9785d3d > files

perl-bioperl-1.5.2_102-1mdv2008.1.noarch.rpm

Files

-rwxr-xr-x 2871 root root /usr/bin/bp_aacomp.pl
-rwxr-xr-x 15409 root root /usr/bin/bp_biblio.pl
-rwxr-xr-x 8392 root root /usr/bin/bp_biofetch_genbank_proxy.pl
-rwxr-xr-x 3744 root root /usr/bin/bp_bioflat_index.pl
-rwxr-xr-x 1647 root root /usr/bin/bp_biogetseq.pl
-rwxr-xr-x 19797 root root /usr/bin/bp_bulk_load_gff.pl
-rwxr-xr-x 4357 root root /usr/bin/bp_chaos_plot.pl
-rwxr-xr-x 6483 root root /usr/bin/bp_classify_hits_kingdom.pl
-rwxr-xr-x 2724 root root /usr/bin/bp_composite_LD.pl
-rwxr-xr-x 5730 root root /usr/bin/bp_contig_draw.pl
-rwxr-xr-x 2764 root root /usr/bin/bp_dbsplit.pl
-rwxr-xr-x 4272 root root /usr/bin/bp_embl2picture.pl
-rwxr-xr-x 2202 root root /usr/bin/bp_extract_feature_seq.pl
-rwxr-xr-x 15241 root root /usr/bin/bp_fast_load_gff.pl
-rwxr-xr-x 3952 root root /usr/bin/bp_fastam9_to_table.pl
-rwxr-xr-x 12393 root root /usr/bin/bp_feature_draw.pl
-rwxr-xr-x 8328 root root /usr/bin/bp_fetch.pl
-rwxr-xr-x 1842 root root /usr/bin/bp_filter_search.pl
-rwxr-xr-x 9459 root root /usr/bin/bp_flanks.pl
-rwxr-xr-x 23344 root root /usr/bin/bp_frend.pl
-rwxr-xr-x 3157 root root /usr/bin/bp_gccalc.pl
-rwxr-xr-x 10445 root root /usr/bin/bp_genbank2gff.pl
-rwxr-xr-x 11715 root root /usr/bin/bp_genbank2gff3.pl
-rwxr-xr-x 3806 root root /usr/bin/bp_generate_histogram.pl
-rwxr-xr-x 3741 root root /usr/bin/bp_glyphs1-demo.pl
-rwxr-xr-x 3029 root root /usr/bin/bp_glyphs2-demo.pl
-rwxr-xr-x 4821 root root /usr/bin/bp_heterogeneity_test.pl
-rwxr-xr-x 2738 root root /usr/bin/bp_hmmer_to_table.pl
-rwxr-xr-x 5170 root root /usr/bin/bp_index.pl
-rwxr-xr-x 5565 root root /usr/bin/bp_load_gff.pl
-rwxr-xr-x 1860 root root /usr/bin/bp_local_taxonomydb_query.pl
-rwxr-xr-x 3295 root root /usr/bin/bp_make_mrna_protein.pl
-rwxr-xr-x 4945 root root /usr/bin/bp_mask_by_search.pl
-rwxr-xr-x 2312 root root /usr/bin/bp_meta_gff.pl
-rwxr-xr-x 3091 root root /usr/bin/bp_mrtrans.pl
-rwxr-xr-x 4099 root root /usr/bin/bp_mutate.pl
-rwxr-xr-x 904 root root /usr/bin/bp_nexus2nh.pl
-rwxr-xr-x 3579 root root /usr/bin/bp_nrdb.pl
-rwxr-xr-x 6310 root root /usr/bin/bp_oligo_count.pl
-rwxr-xr-x 6657 root root /usr/bin/bp_parse_hmmsearch.pl
-rwxr-xr-x 7167 root root /usr/bin/bp_process_gadfly.pl
-rwxr-xr-x 3797 root root /usr/bin/bp_process_sgd.pl
-rwxr-xr-x 7742 root root /usr/bin/bp_process_wormbase.pl
-rwxr-xr-x 2775 root root /usr/bin/bp_query_entrez_taxa.pl
-rwxr-xr-x 4941 root root /usr/bin/bp_remote_blast.pl
-rwxr-xr-x 2028 root root /usr/bin/bp_search2BSML.pl
-rwxr-xr-x 4239 root root /usr/bin/bp_search2alnblocks.pl
-rwxr-xr-x 11721 root root /usr/bin/bp_search2gff.pl
-rwxr-xr-x 2414 root root /usr/bin/bp_search2table.pl
-rwxr-xr-x 2775 root root /usr/bin/bp_search2tribe.pl
-rwxr-xr-x 4423 root root /usr/bin/bp_search_overview.pl
-rwxr-xr-x 1742 root root /usr/bin/bp_seq_length.pl
-rwxr-xr-x 2283 root root /usr/bin/bp_seqconvert.pl
-rwxr-xr-x 2576 root root /usr/bin/bp_seqfeature_load.pl
-rwxr-xr-x 2387 root root /usr/bin/bp_seqret.pl
-rwxr-xr-x 4316 root root /usr/bin/bp_split_seq.pl
-rwxr-xr-x 5644 root root /usr/bin/bp_sreformat.pl
-rwxr-xr-x 1672 root root /usr/bin/bp_taxid4species.pl
-rwxr-xr-x 2630 root root /usr/bin/bp_taxonomy2tree.pl
-rwxr-xr-x 1478 root root /usr/bin/bp_translate_seq.pl
-rwxr-xr-x 1465 root root /usr/bin/bp_tree2pag.pl
-rwxr-xr-x 7526 root root /usr/bin/bp_unflatten_seq.pl
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Align
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO
-rw-r--r-- 14129 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO.pm
-rw-r--r-- 22299 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AnalysisI.pm
-rw-r--r-- 4678 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AnalysisParserI.pm
-rw-r--r-- 6114 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AnalysisResultI.pm
-rw-r--r-- 8587 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AnnotatableI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation
-rw-r--r-- 6144 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AnnotationCollectionI.pm
-rw-r--r-- 4366 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AnnotationI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Assembly
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio
-rw-r--r-- 10487 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Cluster
-rw-r--r-- 3779 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/ClusterI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/ClusterIO
-rw-r--r-- 7374 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/ClusterIO.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/CodonUsage
-rw-r--r-- 6022 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/ConfigData.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Coordinate
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/DB
-rw-r--r-- 2445 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/DBLinkContainerI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Das
-rw-r--r-- 13389 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/DasI.pm
-rw-r--r-- 2691 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/DescribableI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Event
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Expression
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Factory
-rw-r--r-- 6743 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/FeatureHolderI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/FeatureIO
-rw-r--r-- 13360 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/FeatureIO.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Graph
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Graphics
-rw-r--r-- 3219 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Graphics.pm
-rw-r--r-- 2344 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/IdCollectionI.pm
-rw-r--r-- 4848 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/IdentifiableI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Index
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/LiveSeq
-rw-r--r-- 11136 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/LocatableSeq.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Location
-rw-r--r-- 11470 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/LocationI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Map
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/MapIO
-rw-r--r-- 4865 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/MapIO.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Matrix
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Ontology
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/OntologyIO
-rw-r--r-- 9134 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/OntologyIO.pm
-rw-r--r-- 16843 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Perl.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Phenotype
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/PopGen
-rw-r--r-- 24215 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/PrimarySeq.pm
-rw-r--r-- 23657 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/PrimarySeqI.pm
-rw-r--r-- 19223 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/PullParserI.pm
-rw-r--r-- 8305 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Range.pm
-rw-r--r-- 15883 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/RangeI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Restriction
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Root
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Search
-rw-r--r-- 5113 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SearchDist.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SearchIO
-rw-r--r-- 12715 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SearchIO.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Seq
-rw-r--r-- 36922 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Seq.pm
-rw-r--r-- 3133 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SeqAnalysisParserI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SeqFeature
-rw-r--r-- 17008 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SeqFeatureI.pm
-rw-r--r-- 6119 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SeqI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SeqIO
-rw-r--r-- 21797 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SeqIO.pm
-rw-r--r-- 24456 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SeqUtils.pm
-rw-r--r-- 67910 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SimpleAlign.pm
-rw-r--r-- 7327 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/SimpleAnalysisI.pm
-rw-r--r-- 14954 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Species.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Structure
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Symbol
-rw-r--r-- 22897 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Taxon.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Taxonomy
-rw-r--r-- 11438 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Taxonomy.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Tools
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Tree
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/TreeIO
-rw-r--r-- 6864 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/TreeIO.pm
-rw-r--r-- 3090 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/UpdateableSeqI.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Variation
-rw-r--r-- 4764 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/WebAgent.pm
-rw-r--r-- 18930 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Align/AlignI.pm
-rw-r--r-- 50105 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Align/DNAStatistics.pm
-rw-r--r-- 4059 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Align/PairwiseStatistics.pm
-rw-r--r-- 8134 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Align/ProteinStatistics.pm
-rw-r--r-- 2226 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Align/StatisticsI.pm
-rw-r--r-- 6337 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Align/Utilities.pm
-rw-r--r-- 6215 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/bl2seq.pm
-rw-r--r-- 10037 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/clustalw.pm
-rw-r--r-- 6271 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/emboss.pm
-rw-r--r-- 5702 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/fasta.pm
-rw-r--r-- 4724 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/largemultifasta.pm
-rw-r--r-- 3432 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/maf.pm
-rw-r--r-- 2841 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/mase.pm
-rw-r--r-- 5794 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/mega.pm
-rw-r--r-- 5415 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/meme.pm
-rw-r--r-- 5244 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/metafasta.pm
-rw-r--r-- 5680 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/msf.pm
-rw-r--r-- 13634 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/nexus.pm
-rw-r--r-- 3264 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/pfam.pm
-rw-r--r-- 13759 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/phylip.pm
-rw-r--r-- 8505 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/po.pm
-rw-r--r-- 2811 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/prodom.pm
-rw-r--r-- 3469 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/psi.pm
-rw-r--r-- 4215 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/selex.pm
-rw-r--r-- 22138 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/AlignIO/stockholm.pm
-rw-r--r-- 6576 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/AnnotationFactory.pm
-rw-r--r-- 15035 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/Collection.pm
-rw-r--r-- 3284 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/Comment.pm
-rw-r--r-- 9395 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/DBLink.pm
-rw-r--r-- 11995 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/OntologyTerm.pm
-rw-r--r-- 11311 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/Reference.pm
-rw-r--r-- 5372 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/SimpleValue.pm
-rw-r--r-- 9009 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/StructuredValue.pm
-rw-r--r-- 3831 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/Target.pm
-rw-r--r-- 2972 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Annotation/TypeManager.pm
-rw-r--r-- 61259 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Assembly/Contig.pm
-rw-r--r-- 17990 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Assembly/ContigAnalysis.pm
drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Assembly/IO
-rw-r--r-- 5059 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Assembly/IO.pm
-rw-r--r-- 14129 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Assembly/Scaffold.pm
-rw-r--r-- 7109 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Assembly/ScaffoldI.pm
-rw-r--r-- 4742 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Assembly/Singlet.pm
-rw-r--r-- 14861 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Assembly/IO/ace.pm
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-rw-r--r-- 2969 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/Article.pm
-rw-r--r-- 5083 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/BiblioBase.pm
-rw-r--r-- 3114 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/Book.pm
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drwxr-xr-x 4096 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/IO
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-rw-r--r-- 5696 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/MedlineArticle.pm
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-rw-r--r-- 2703 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/Thesis.pm
-rw-r--r-- 2949 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Biblio/WebResource.pm
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-rw-r--r-- 4898 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Cluster/ClusterFactory.pm
-rw-r--r-- 3789 root root /usr/lib/perl5/vendor_perl/5.8.8/Bio/Cluster/FamilyI.pm
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