Sophie

Sophie

distrib > Mandriva > 2006.0 > x86_64 > media > plf-non-free > by-pkgid > 077c81380ba0d919337e4fe226b2a0fc > files

paml-3.14-0.beta3.1plf.x86_64.rpm

Files

-rwxr-xr-x257824 root root /usr/bin/baseml
-rwxr-xr-x152416 root root /usr/bin/basemlg
-rwxr-xr-x 10656 root root /usr/bin/chi2
-rwxr-xr-x310624 root root /usr/bin/codeml
-rwxr-xr-x126144 root root /usr/bin/evolver
-rwxr-xr-x166304 root root /usr/bin/mcmctree
-rwxr-xr-x157536 root root /usr/bin/pamp
-rwxr-xr-x130304 root root /usr/bin/yn00
drwxr-xr-x 4096 root root /usr/share/doc/paml-3.14
-rw-r--r-- 56 root root /usr/share/doc/paml-3.14/3s.trees
-rw-r--r-- 86 root root /usr/share/doc/paml-3.14/4s.trees
-rw-r--r-- 297 root root /usr/share/doc/paml-3.14/5s.trees
-rw-r--r-- 132 root root /usr/share/doc/paml-3.14/6s.trees
-rw-r--r-- 4628 root root /usr/share/doc/paml-3.14/GeneticCode.txt
-rw-r--r-- 1306 root root /usr/share/doc/paml-3.14/MCaa.dat
-rw-r--r-- 1581 root root /usr/share/doc/paml-3.14/MCbase.dat
-rw-r--r-- 3520 root root /usr/share/doc/paml-3.14/MCcodon.dat
-rw-r--r-- 1716 root root /usr/share/doc/paml-3.14/MCcodonNSsites.dat
-rw-r--r-- 935 root root /usr/share/doc/paml-3.14/README.txt
-rw-r--r-- 1807 root root /usr/share/doc/paml-3.14/aaml.ctl
-rw-r--r-- 1706 root root /usr/share/doc/paml-3.14/baseml.ctl
-rw-r--r-- 5833 root root /usr/share/doc/paml-3.14/brown.nuc
-rw-r--r-- 270 root root /usr/share/doc/paml-3.14/brown.trees
-rw-r--r-- 2906 root root /usr/share/doc/paml-3.14/codeml.ctl
-rw-r--r-- 2316 root root /usr/share/doc/paml-3.14/codonml.ctl
-rw-r--r-- 5284 root root /usr/share/doc/paml-3.14/dayhoff.dat
drwxr-xr-x 4096 root root /usr/share/doc/paml-3.14/doc
drwxr-xr-x 4096 root root /usr/share/doc/paml-3.14/examples
-rw-r--r-- 1536 root root /usr/share/doc/paml-3.14/g1974a.dat
-rw-r--r-- 1372 root root /usr/share/doc/paml-3.14/g1974c.dat
-rw-r--r-- 1130 root root /usr/share/doc/paml-3.14/g1974p.dat
-rw-r--r-- 1359 root root /usr/share/doc/paml-3.14/g1974v.dat
-rw-r--r-- 1681 root root /usr/share/doc/paml-3.14/grantham.dat
-rw-r--r-- 12131 root root /usr/share/doc/paml-3.14/jones.dat
-rw-r--r-- 1258 root root /usr/share/doc/paml-3.14/miyata.dat
-rw-r--r-- 2370 root root /usr/share/doc/paml-3.14/mtREV24.dat
-rw-r--r-- 3883 root root /usr/share/doc/paml-3.14/mtmam.dat
-rw-r--r-- 354 root root /usr/share/doc/paml-3.14/pamp.ctl
-rw-r--r-- 156 root root /usr/share/doc/paml-3.14/paupblock
-rw-r--r-- 11 root root /usr/share/doc/paml-3.14/paupend
-rw-r--r-- 43 root root /usr/share/doc/paml-3.14/paupstart
-rw-r--r-- 1008 root root /usr/share/doc/paml-3.14/stewart.aa
-rw-r--r-- 219 root root /usr/share/doc/paml-3.14/stewart.trees
-rw-r--r-- 3337 root root /usr/share/doc/paml-3.14/wag.dat
-rw-r--r-- 709 root root /usr/share/doc/paml-3.14/yn00.ctl
-rw-r--r-- 22976 root root /usr/share/doc/paml-3.14/doc/paml.html
-rw-r--r--391568 root root /usr/share/doc/paml-3.14/doc/pamlDOC.pdf
-rw-r--r-- 35426 root root /usr/share/doc/paml-3.14/doc/pamlHistory.txt
-rw-r--r-- 161 root root /usr/share/doc/paml-3.14/examples/9s.trees
drwxr-xr-x 4096 root root /usr/share/doc/paml-3.14/examples/HIVNSsites
drwxr-xr-x 4096 root root /usr/share/doc/paml-3.14/examples/MouseLemurs
-rw-r--r-- 1829 root root /usr/share/doc/paml-3.14/examples/README.txt
drwxr-xr-x 4096 root root /usr/share/doc/paml-3.14/examples/TipDate
-rw-r--r-- 3249 root root /usr/share/doc/paml-3.14/examples/YN00abglobin.result
-rw-r--r-- 1711 root root /usr/share/doc/paml-3.14/examples/abglobin.aa
-rw-r--r-- 6186 root root /usr/share/doc/paml-3.14/examples/abglobin.nuc
-rw-r--r-- 339 root root /usr/share/doc/paml-3.14/examples/abglobin.trees
-rw-r--r-- 5706 root root /usr/share/doc/paml-3.14/examples/dNdSGene1.nuc
drwxr-xr-x 4096 root root /usr/share/doc/paml-3.14/examples/lysin
drwxr-xr-x 4096 root root /usr/share/doc/paml-3.14/examples/lysozyme
drwxr-xr-x 4096 root root /usr/share/doc/paml-3.14/examples/mtCDNA
drwxr-xr-x 4096 root root /usr/share/doc/paml-3.14/examples/mtCDNAape
-rw-r--r-- 11708 root root /usr/share/doc/paml-3.14/examples/mtprim9.nuc
-rw-r--r-- 3998 root root /usr/share/doc/paml-3.14/examples/HIVNSsites/HIVenvSweden.paup
-rw-r--r-- 234 root root /usr/share/doc/paml-3.14/examples/HIVNSsites/HIVenvSweden.trees
-rw-r--r-- 1005 root root /usr/share/doc/paml-3.14/examples/HIVNSsites/README.txt
-rw-r--r-- 1649 root root /usr/share/doc/paml-3.14/examples/HIVNSsites/codeml.ctl
-rw-r--r-- 85468 root root /usr/share/doc/paml-3.14/examples/MouseLemurs/MouseLemurs.nuc
-rw-r--r-- 2006 root root /usr/share/doc/paml-3.14/examples/MouseLemurs/MouseLemurs.trees
-rw-r--r-- 4244 root root /usr/share/doc/paml-3.14/examples/MouseLemurs/README.txt
-rw-r--r-- 1244 root root /usr/share/doc/paml-3.14/examples/MouseLemurs/baseml.ctl
-rw-r--r-- 1542 root root /usr/share/doc/paml-3.14/examples/MouseLemurs/codeml.ctl
-rw-r--r-- 6045 root root /usr/share/doc/paml-3.14/examples/TipDate/README.txt
-rw-r--r-- 25725 root root /usr/share/doc/paml-3.14/examples/TipDate/TipDate.phy
-rw-r--r-- 232 root root /usr/share/doc/paml-3.14/examples/TipDate/TipDate.trees
-rw-r--r-- 796 root root /usr/share/doc/paml-3.14/examples/TipDate/baseml.ctl
-rw-r--r--100683 root root /usr/share/doc/paml-3.14/examples/lysin/1LIS.pdb
-rw-r--r-- 6195 root root /usr/share/doc/paml-3.14/examples/lysin/README.txt
-rw-r--r-- 1524 root root /usr/share/doc/paml-3.14/examples/lysin/SiteNumbering.txt
-rw-r--r-- 1656 root root /usr/share/doc/paml-3.14/examples/lysin/codeml.ctl
-rw-r--r-- 1626 root root /usr/share/doc/paml-3.14/examples/lysin/codemlYangSwanson2002.ctl
-rw-r--r-- 14880 root root /usr/share/doc/paml-3.14/examples/lysin/lysin.nuc
-rw-r--r-- 1099 root root /usr/share/doc/paml-3.14/examples/lysin/lysin.trees
-rw-r--r-- 14530 root root /usr/share/doc/paml-3.14/examples/lysin/lysinYangSwanson2002.nuc
-rw-r--r-- 2105 root root /usr/share/doc/paml-3.14/examples/lysozyme/README.txt
-rw-r--r-- 1788 root root /usr/share/doc/paml-3.14/examples/lysozyme/codeml.ctl
-rw-r--r-- 1685 root root /usr/share/doc/paml-3.14/examples/lysozyme/lysozymeLarge.ctl
-rw-r--r-- 11716 root root /usr/share/doc/paml-3.14/examples/lysozyme/lysozymeLarge.nuc
-rw-r--r-- 662 root root /usr/share/doc/paml-3.14/examples/lysozyme/lysozymeLarge.trees
-rw-r--r-- 1788 root root /usr/share/doc/paml-3.14/examples/lysozyme/lysozymeSmall.ctl
-rw-r--r-- 4124 root root /usr/share/doc/paml-3.14/examples/lysozyme/lysozymeSmall.nuc
-rw-r--r-- 646 root root /usr/share/doc/paml-3.14/examples/lysozyme/lysozymeSmall.trees
-rw-r--r-- 3060 root root /usr/share/doc/paml-3.14/examples/lysozyme/lysozymeSmall.txt
-rw-r--r-- 1752 root root /usr/share/doc/paml-3.14/examples/mtCDNA/OmegaAA.dat
-rw-r--r-- 3445 root root /usr/share/doc/paml-3.14/examples/mtCDNA/README.txt
-rw-r--r-- 1360 root root /usr/share/doc/paml-3.14/examples/mtCDNA/codeml.ctl
-rw-r--r-- 1681 root root /usr/share/doc/paml-3.14/examples/mtCDNA/grantham.dat
-rw-r--r-- 23571 root root /usr/share/doc/paml-3.14/examples/mtCDNA/mtCDNApri.aa
-rw-r--r-- 73260 root root /usr/share/doc/paml-3.14/examples/mtCDNA/mtCDNApri.nuc
-rw-r--r-- 36 root root /usr/share/doc/paml-3.14/examples/mtCDNA/mtCDNApri.trees
-rw-r--r-- 1742 root root /usr/share/doc/paml-3.14/examples/mtCDNAape/OmegaAA.dat
-rw-r--r-- 2117 root root /usr/share/doc/paml-3.14/examples/mtCDNAape/codeml.ctl
-rw-r--r-- 67231 root root /usr/share/doc/paml-3.14/examples/mtCDNAape/mtCDNAape.nuc
-rw-r--r-- 210 root root /usr/share/doc/paml-3.14/examples/mtCDNAape/mtCDNAape.trees
-rw-r--r-- 1192 root root /usr/share/doc/paml-3.14/examples/mtCDNAape/readme.txt