diff -up seamonkey-2.48/mozilla/dom/indexedDB/moz.build.system-sqlite seamonkey-2.48/mozilla/dom/indexedDB/moz.build
--- seamonkey-2.48/mozilla/dom/indexedDB/moz.build.system-sqlite	2017-08-03 02:08:31.844645233 +0200
+++ seamonkey-2.48/mozilla/dom/indexedDB/moz.build	2017-08-03 02:45:26.151284569 +0200
@@ -101,7 +101,6 @@ if CONFIG['GNU_CC']:
     CXXFLAGS += ['-Wno-error=shadow']
 
 LOCAL_INCLUDES += [
-    '/db/sqlite3/src',
     '/dom/base',
     '/dom/storage',
     '/dom/workers',
@@ -109,3 +108,6 @@ LOCAL_INCLUDES += [
     '/xpcom/build',
     '/xpcom/threads',
 ]
+
+if not CONFIG['MOZ_NATIVE_SQLITE']:
+    LOCAL_INCLUDES += [ '/db/sqlite3/src' ]
diff -up seamonkey-2.48/mozilla/storage/moz.build.system-sqlite seamonkey-2.48/mozilla/storage/moz.build
--- seamonkey-2.48/mozilla/storage/moz.build.system-sqlite	2017-08-03 02:08:31.864645111 +0200
+++ seamonkey-2.48/mozilla/storage/moz.build	2017-08-03 02:42:07.276493341 +0200
@@ -114,8 +114,10 @@
     DEFINES['MOZ_MEMORY_TEMP_STORE_PRAGMA'] = True
 
 LOCAL_INCLUDES += [
-    '/db/sqlite3/src',
     '/dom/base',
 ]
 
+if not CONFIG['MOZ_NATIVE_SQLITE']:
+    LOCAL_INCLUDES += [ '/db/sqlite3/src' ]
+
 CXXFLAGS += CONFIG['SQLITE_CFLAGS']