%define  _disable_ld_no_undefined 1

Name:           jhdf5
Version:        2.9
Release:        %mkrel 6
Summary:        Java HDF5 Package

Group:          Development/Java
License:        BSD with advertising
URL:            http://www.hdfgroup.org/hdf-java-html/
Source0:        http://www.hdfgroup.org/ftp/HDF5/hdf-java/src/hdf-java-%{version}-src.tar
Source1:        hdfview
Source2:        hdfview.xml
Source3:        hdfview.desktop

Patch1: jhdf5-0001-add-a-generic-linux-host.patch
Patch2: jhdf5-0002-add-H4_-prefix-to-constants.patch
Patch3: jhdf5-0003-use-system-linker-for-shared-library.patch
Patch4: jhdf5-0004-remove-writable-prefix-check.patch
Patch5: jhdf5-0005-update-config.sub-and-config.guess.patch
Patch6: jhdf5-0006-update-configure.patch

BuildRequires:  jpackage-utils
BuildRequires:  java-devel
BuildRequires:  hdf5-devel
BuildRequires:  jpeg-devel

BuildRequires: junit

Requires:       jpackage-utils
Requires:       java
# hdf5 does not bump soname but check at runtime
Requires:       hdf5 = %{_hdf5_version}

Provides:       hdf-java = %version-%release
Obsoletes:      hdf-java

%description
HDF is a versatile data model that can represent very complex data objects
and a wide variety of meta-data. It is a completely portable file format
with no limit on the number or size of data objects in the collection.

This Java package wrap the native HDF5 library.

%package devel
Summary: JHDF5 development files
Group: Development/Java
Requires: %{name} = %{version}-%{release}
Requires: hdf5-devel

%description devel
JHDF5 development headers and libraries.

%package -n jhdf
Summary:        Java HDF Package
Group:          Development/Java

BuildRequires:  jpackage-utils
BuildRequires:  java-devel
BuildRequires:  hdf-devel

Requires:       jpackage-utils
Requires:       java

%description -n jhdf
HDF is a versatile data model that can represent very complex data objects
and a wide variety of meta-data. It is a completely portable file format
with no limit on the number or size of data objects in the collection.

This Java package wrap the native HDF4 library.

%package -n jhdfobj
Summary:        Java HDF/HDF5 Object Package
Group:          Development/Java

BuildRequires:  jpackage-utils
BuildRequires:  java-devel
BuildRequires:  hdf5-devel
BuildRequires:  hdf-devel

Requires:       jpackage-utils
Requires:       java
Requires:       hdf
# hdf5 does not bump soname but check at runtime
Requires:       hdf5 = %{_hdf5_version}
Requires:       jhdf = %{version}-%{release}
Requires:       jhdf5 = %{version}-%{release}

BuildArch:      noarch

%description -n jhdfobj
HDF is a versatile data model that can represent very complex data objects
and a wide variety of meta-data. It is a completely portable file format
with no limit on the number or size of data objects in the collection.

This Java package implements HDF4/HDF5 data objects in an 
object-oriented form. It provides a common Java API for accessing HDF files.


%package -n hdfview
Summary:        Java HDF Object viewer
Group:          File tools 

BuildRequires:  jpackage-utils
BuildRequires:  java-devel

# for convert
BuildRequires:  ImageMagick
# for desktop-file-install
BuildRequires:  desktop-file-utils

Requires:       jpackage-utils
Requires:       java
Requires:       jhdfobj = %{version}-%{release}

Requires(post): desktop-file-utils
Requires(postun): desktop-file-utils

BuildArch:      noarch

%description -n hdfview
HDF is a versatile data model that can represent very complex data objects
and a wide variety of meta-data. It is a completely portable file format
with no limit on the number or size of data objects in the collection.

This package provides a HDF4/HDF5 viewer.


%prep
%setup -q -n hdf-java
%patch1 -p1
%patch2 -p1
%patch3 -p1
%patch4 -p1
%patch5 -p1
%patch6 -p1

# remove shipped jars
rm $(find -name \*.jar)

# build jar repo
build-jar-repository -p lib junit

# fix spurious-executable-perm
chmod -x $(find docs -type f)
chmod -x $(find native -type f)
chmod -x COPYING

# fix wrong-file-end-of-line-encoding 
sed -i 's/\r//' docs/hdfview/UsersGuide/RELEASE.txt

%build
%configure2_5x --with-jdk=%{java_home}/include,%{java_home}/lib \
        --with-hdf5=%{_includedir},%{_libdir} \
        --with-hdf4=%{_includedir}/hdf,%{_libdir}/hdf \
        --without-h4toh5 \
        --without-libsz \
        --with-libz=%{_includedir},%{_libdir} \
        --with-libjpeg=%{_includedir},%{_libdir}

# Make JNI (libjhdf.so libjhdf5.so) and
# make only required jars (not netcdf nor fits related packages)
pushd .
cd ncsa; \
make
popd

make natives jhdf-packages jhdf5-packages \
     jhdfobj-packages jhdfview-packages

%check
make tests

%install

# jhdf5 jars
install -dm 755 %{buildroot}%{_jnidir}
install -pm 0644 lib/jhdf5.jar %{buildroot}%{_jnidir}/jhdf5.jar

# jhdf5 lib
install -dm 755 %{buildroot}%{_libdir}/jhdf5
install -m 744 lib/linux/libjhdf5.so %{buildroot}%{_libdir}/jhdf5

# jhdf jars
install -dm 755 %{buildroot}%{_jnidir}
install -pm 0644 lib/jhdf.jar %{buildroot}%{_jnidir}/jhdf.jar

# jhdf lib
install -dm 755 %{buildroot}%{_libdir}/jhdf
install -m 744 lib/linux/libjhdf.so %{buildroot}%{_libdir}/jhdf

# jhdfobj jars
install -dm 755 %{buildroot}%{_javadir}
install -pm 0644 lib/jhdfobj.jar %{buildroot}%{_javadir}/jhdfobj.jar
install -pm 0644 lib/jhdf4obj.jar %{buildroot}%{_javadir}/jhdf4obj.jar
install -pm 0644 lib/jhdf5obj.jar %{buildroot}%{_javadir}/jhdf5obj.jar

# hdfview
install -dm 755 %{buildroot}%{_javadir}
install -pm 0644 lib/jhdfview.jar %{buildroot}%{_javadir}/jhdfview.jar

install -dm 755 %{buildroot}%{_bindir}
install -m 755 %{SOURCE1} %{buildroot}%{_bindir}/hdfview

# Create and install hicolor icons.
for i in 16 22 32 48 ; do
  mkdir -p icons/${i}x${i}/apps

  mkdir -p %{buildroot}%{_datadir}/icons/hicolor/${i}x${i}/apps
  mkdir -p %{buildroot}%{_datadir}/icons/hicolor/${i}x${i}/mimetypes

  convert -resize ${i}x${i} ncsa/hdf/view/icons/hdf_large.gif \
    icons/${i}x${i}/apps/hdfview.png

  install -pm 0644 icons/${i}x${i}/apps/hdfview.png \
    %{buildroot}%{_datadir}/icons/hicolor/${i}x${i}/apps/hdfview.png

  install -pm 0644 icons/${i}x${i}/apps/hdfview.png \
    %{buildroot}%{_datadir}/icons/hicolor/${i}x${i}/mimetypes/application-x-hdf.png

done

# .desktop file
mkdir -p %{buildroot}%{_datadir}/applications
desktop-file-install                                    \
        --dir %{buildroot}%{_datadir}/applications      \
        %{SOURCE3}

# mime types
mkdir -p %{buildroot}%{_datadir}/mime/packages
install -p -D -m 644 %{SOURCE2} \
        %{buildroot}%{_datadir}/mime/packages/hdfview.xml

%files
%{_jnidir}/jhdf5.jar
%attr(755,root,root) %{_libdir}/jhdf5/libjhdf5.so
%doc COPYING Readme.txt

%files -n jhdf
%{_jnidir}/jhdf.jar
%attr(755,root,root) %{_libdir}/jhdf/libjhdf.so
%doc COPYING Readme.txt

%files -n jhdfobj
%{_javadir}/jhdfobj.jar
%{_javadir}/jhdf4obj.jar
%{_javadir}/jhdf5obj.jar
%doc COPYING Readme.txt

%files -n hdfview
%{_bindir}/hdfview
%{_datadir}/applications/hdfview.desktop
%{_datadir}/icons/hicolor/*/*/*
%{_datadir}/mime/packages/hdfview.xml
%{_javadir}/jhdfview.jar
%doc COPYING Readme.txt
%doc docs 



%changelog
* Wed Oct 15 2014 umeabot <umeabot> 2.9-6.mga5
+ Revision: 750955
- Second Mageia 5 Mass Rebuild

* Tue Sep 16 2014 umeabot <umeabot> 2.9-5.mga5
+ Revision: 680808
- Mageia 5 Mass Rebuild

* Fri Jan 03 2014 dmorgan <dmorgan> 2.9-4.mga4
+ Revision: 564048
- Rebuild against current hdf5
- Upgrade to the Java packaging draft (JNI jar/so location)

  + umeabot <umeabot>
    - Mageia 4 Mass Rebuild

  + fwang <fwang>
    - use configure2_5x
    - update patches
    - new version 2.9

* Sat Jan 12 2013 umeabot <umeabot> 2.8-11.mga3
+ Revision: 355443
- Mass Rebuild - https://wiki.mageia.org/en/Feature:Mageia3MassRebuild

* Wed Jan 09 2013 dmorgan <dmorgan> 2.8-10.mga3
+ Revision: 343443
- Install lib in libdir

* Wed Jan 09 2013 dmorgan <dmorgan> 2.8-9.mga3
+ Revision: 343397
- imported package jhdf5


* Wed Dec 19 2012 Stanislav Ochotnicky <sochotnicky@redhat.com> - 2.8-9
- revbump after jnidir change

* Mon Dec 03 2012 Orion Poplawski <orion@cora.nwra.com> - 2.8-8
- Rebuild for hdf5 1.8.10
- Add BR libjpeg-devel

* Thu Jul 19 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.8-7
- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild

* Tue May 15 2012 Orion Poplawski <orion@cora.nwra.com> - 2.8-6
- Rebuild with hdf5 1.8.9

* Mon Feb 13 2012 Clément David <davidcl@fedoraproject.org> - 2.8-5
- bump version to depends on latest hdf5

* Tue Jan 31 2012 Clément David <davidcl@fedoraproject.org> - 2.8-4
- fix hdfview CLASSPATH

* Mon Jan 30 2012 Clément David <davidcl@fedoraproject.org> - 2.8-3
- split jhdfobj as an object oriented API of jhdf and jhdf5.

* Fri Jan 27 2012 Clément David <davidcl@fedoraproject.org> - 2.8-2
- use %%{_hdf5_version} for hdfview
- use same jhdf and jhdf5 versions for hdfview

* Wed Jan 25 2012 Clément David <davidcl@fedoraproject.org> - 2.8-1
- update to version 2.8

* Wed Jan 25 2012 Clément David <davidcl@fedoraproject.org> - 2.7-9
- move jars to more standard locations

* Fri Jan 13 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.7-8
- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild

* Tue Nov 22 2011 Orion Poplawski <orion@cora.nwra.com> - 2.7-7
- use %%{_hdf5_version}

* Thu Nov 17 2011 Clément David <c.david86@gmail.com> - 2.7-6
- use %%{hdf5ver} to avoid runtime crash

* Thu Nov 03 2011 Clément David <c.david86@gmail.com> - 2.7-5
- rebuilt

* Thu Nov  3 2011 Clément David <c.david86@gmail.com> - 2.7-4
- remove rpm-build BuildRequire

* Tue Oct 25 2011 Clément David <c.david86@gmail.com> - 2.7-3
- Fix executable permissions
- pass rpmlint

* Tue Aug 16 2011 Clément David <c.david86@gmail.com> - 2.7-2
- Update mime types to x-hdf and x-hdf5

* Tue Aug 16 2011 Clément David <c.david86@gmail.com> - 2.7-1
- Initial packaging