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<title>Clint Whaley's Papers and Publications</title>
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<center>
<h1>Papers and Publications for R. Clint Whaley</h1>
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<hr>
<h1>Journal Publications</h1>
<ol>
<li> <A HREF="http://www.cs.utsa.edu/~whaley/papers/SCE001156.pdf">
     "Reducing Floating Point Error in Dot Product using the Superblock Family
      of Algorithms"</A>, by Anthony M. Castaldo, R. Clint Whaley and 
      Anthony T. Chronopoulos.  
      <i>SIAM Journal on Scientific Computing (SISC)</i>, Volume 31, Number 2,
      pp 1156-1174, 2008.
<p>
<li> <A HREF="http://www.cs.utsa.edu/~whaley/papers/timing_SPE08.pdf">
   "Achieving accurate and context-sensitive timing for code optimization"</A>,
   by R. Clint Whaley and Anthony M. Castaldo.  
   <i>Software: Practice & Experience</i>, Volume 38, Number 15, pp 1621-1642,
      April, 2008.
<p>

<li> <a HREF="http://www.cs.utsa.edu/~whaley/papers/spercw04.ps">
"Minimizing Development and Maintenance Costs in Supporting Persistently
 Optimized BLAS"</a>,
by R. Clint Whaley and Antoine Petitet.  
<i>Software: Practice & Experience</i>, Volume 35, Number 2, pp 101-121,
February, 2005.
<p>

<li> "Self-Adapting Linear Algebra Algorithms and Software", by
     J. Demmel, J. Dongarra, V. Eijkhout, E. Fuentes, A. Petitet, 
     R. Vuduc, R. C. Whaley and K. Yelick. <i>Proceedings of the IEEE</i>,
     Volume 93, Number 2, pp 293-312, February, 2005.
<p>
<li> <a HREF="http://www.cs.utsa.edu/~whaley/papers/blast-toms.pdf">
"An Updated Set of Basic Linear Algebra Subprograms (BLAS)"</a>, 
by L. Susan Blackford, James Demmel, Jack Dongarra, Iain Duff, 
Sven Hammarling, Greg Henry, Micheal Heroux, Linda Kaufman, 
Andrew Lumsdain, Antoine Petitet, Roldan Pozo, Karin Remington,
and R. Clint Whaley.  <i>ACM Transactions on Mathematical Software</i>,
28(2):135-151, June 2002.
<p>

<li> <a HREF="http://www.cs.utsa.edu/~whaley/papers/lawn147.ps">
"Automated Empirical Optimization of Software and the ATLAS project"</a>
by R. Clint Whaley, Antoine Petitet and Jack Dongarra. 
<i>Parallel Computing</i>, 27(1-2):3-35, 2001.
<p>

<li> <a HREF="http://www.netlib.org/lapack/lawns/lawn112.ps">
"Practical Experience in the Numerical Dangers of Heterogeneous Computing",</a>
<i>ACM Transactions on Mathematical Software</i> Volume 23, Number 2, 
pages 133-147, June 1997.
<p>

<li><a HREF="http://www.netlib.org/lapack/lawns/lawn95.ps">
"ScaLAPACK: A Portable Linear Algebra Library for Distributed Memory Computers
- Design Issues and Performance",</a>
by J. Choi, J. Demmel, I. Dhillon, J. Dongarra, S. Ostrouchov, A. Petitet,
   K. Stanley, D. Walker, and R. C. Whaley.  
<i>Computer Physics Communications</i> Volume 97, pages 1-15, 1996.
<p>

<li><a HREF="http://www.netlib.org/lapack/lawns/lawn80.ps">
"The Design and Implementation of ScaLAPACK LU, QR, and Cholesky",</a>
by J. Choi, J. Dongarra, S. Ostrouchov, A. Petitet, D. Walker, and 
R. C. Whaley.  <i>Scientific Programming</i> Volume 5, pages 173-184, 1996.
<p>

</ol>

<hr>
<h1>Refereed Conference Publications</h1>
<ol>

<LI><A HREF="http://www.cs.utsa.edu/~whaley/papers/ettIEEE.pdf">
    "Minimizing Startup Costs for Performance-Critical Threading"</A> by
    Anthony M. Castaldo and R. Clint Whaley.
    Accepted for publication in the 
    <A HREF=http://ipdps.org/"><i>23rd IEEE International Parallel and
    Distributed Processing Symposium</i></A>, Rome, Italy, May 25-29, 2009.
<p>
<li><A HREF="http://www.cs.utsa.edu/~whaley/papers/lanb.pdf">
    "Empirically Tuning LAPACK's Blocking Factor for Increased Performance"</A>,
    by R. Clint Whaley.  
    <A HREF="http://www.imcsit.org/?cont=97&type=page&page=78">
    <i>International Multiconference on Computer Science and Information
       Technology</i></A>,
    Wisla, Poland, October 20-22, 2008.
<p>
<li><A HREF="http://www.cs.utsa.edu/~qingyi/papers/gemm07.pdf">
"Automated Transformation for Performance-Critical Kernels"</A>, 
by Qing Yi and R. Clint Whaley. <i>ACM SIGPLAN Symposium on Library-Centric
Software Design</i>, Montreal, Canada.  Oct, 2007.
<p>
<li><A HREF="http://www.cs.utsa.edu/~whaley/papers/icpp05_8.ps">
     "Tuning High Performance Kernels through Empirical Compilation"</A>
     by R. Clint Whaley and David B. Whalley.  
     <i>The 2005 International Conference on Parallel Processing</i> (ICPP-05),
     June 14-17, 2005.<p>
<p>
<li> "Automatically Tuned Linear Algebra Software"
by R. Clint Whaley and Jack Dongarra. 
<i>Ninth SIAM Conference on Parallel Processing for Scientific Computing</i>, 
   March 22-24, 1999, CD-ROM Proceedings.
<p>

<li><a HREF="http://www.netlib.org/lapack/lawns/lawn139.ps">
"Numerical Linear Algebra Problem Solving Environment Designer's Perspective"</a>,
   <i>Society for Industrial and Applied Mathematics</i>, Philadelphia, PA, 
   1999.
<p>

<li> <a HREF="http://www.cs.utsa.edu/~whaley/papers/atlas_sc98.ps">
"Automatically Tuned Linear Algebra Software"</a>
by R. Clint Whaley and Jack Dongarra.  
<b>Winner, best paper in systems catagory</b>, SuperComputing 1998:
   High Performance Networking and Computing.
<p>

<li><a HREF="http://www.netlib.org/utk/papers/siam397-scalapack/siam397-scalapack.ps">
"ScaLAPACK: A Linear Algebra Library for Message-passing Computers",<a>
by S. Hammarling, G. Henry, A. Petitet, K. Stanley, D. Walker, and R. Whaley.
<i>Proceedings of 1997 SIAM Conference on Parallel Processing</i>,
May 1997.
<p>

<li><a HREF="http://www.netlib.org/lapack/lawns/lawn100.ps">
"A Proposal for a Set of Parallel Basic Linear Algebra Subprograms"</a>,
by Jaeyoung Choi, J. Dongarra, S. Ostrouchov, A. Petitet, D. Walker
and R. C. Whaley.  Second International Workshop, PARA'95, Lyngby, Denmark, 
August 1995.  Proceedings in
<i>Lecture Notes in Computer Science</i>, Number 1041, pages 107-114,
Springer-Verlag, Berlin - Heidenberg - New York, 1996.
<p>

<li>"Two Dimensional Basic Linear Algebra Communications Subprograms",
by R. Clint Whaley and Jack Dongarra.  
<i>Proceedings of the sixth SIAM Conference on Parallel Processing for
   Scientific Computing</i>, SIAM Publications, pages 347-352, 
   Philadelphia, 1993.
<p>
</ol>

<hr>
<h1>Books</h1>
<ol>
<li> <a HREF="http://www.netlib.org/scalapack/slug/">
<u>ScaLAPACK Users' Guide</u></a>
by L.S. Blackford, J. Choi, A. Cleary, E. D'Azevedo, J. Demmel, I. Dhillon,
   J. Dongarra, S. Hammarling, G. Henry, A. Petitet, K. Stanley, D. Walker,
   R. C. Whaley.  SIAM Publications, Philadelphia, 1997, ISBN 0-89871-397-8.
<li><u>Handbook on Parallel and Distributed Processing</u>, 
<i>editors:</i> J. Blazewicz, K. Ecker, B. Plateau, D. Trystram.
Springer-Verlag Berlin Headelberg, 2000, ISBN: 3-540-6641-6.
<p>
</ol>


<hr>
<h1>Doctoral Dissertation</h1>
<ol>
<li><a HREF="http://www.cs.utsa.edu/~whaley/papers/diss.ps">
"Automated Empirical Optimization of High Performance Floating Point Kernels"
</a> by R. Clint Whaley.  Defended November 2, 2004. <br>
Advisor: <A HREF="http://www.cs.fsu.edu/~whalley">David Whalley</A><br>
</ol>

<hr>
<h1>Master's Thesis.</h1>
<ol>
<li><a HREF="http://www.netlib.org/lapack/lawns/lawn73.ps">
"Basic Linear Algebra Communication Subprograms: Analysis and 
 Implementation Across Multiple Parallel Architectures"</a> by R. Clint Whaley.
May, 1994. <br>
Advisor: <A HREF="http://www.netlib.org/utk/people/JackDongarra/">
Jack Dongarra</A><br>
</ol>

<hr>
<h1>Selected Workshops and Presentations</h1>
<ol>
<li><A HREF="http://www.cs.utsa.edu/~whaley/papers/atlas07iWAPT.pdf">
"ATLAS Version 3.8 : Overview and Status"</A> by R. Clint Whaley.
<A HREF="http://www.na.cse.nagoya-u.ac.jp/~yamamoto/iWAPT2007.html">
<i>International Workshop on Automatic Performance Tuning (iWAPT07)</i></A>,
Tokyo, Japan, September 20-21, 2007.  Invited speaker with paper and
talk.  Proceedings available</a>.
<li><A HREF="http://www.cs.utsa.edu/~whaley/talks/autotune07.pdf">
"Automatically Tuned Linear Algebra Software"<A> by R. Clint Whaley,
   <A HREF="http://cscads.rice.edu/workshops/july2007/autotune-workshop-07">
   Workshop on Automatic Tuning for Petascale Systems</A>,
    Snowbird, Utah, July 9-12 2007.
<li><A HREF="http://www.cs.utsa.edu/~whaley/talks/cri07.pdf">
    "NSF CRI CNS-0551504, ATLAS Support and Development"</A>, 
    by R. Clint Whaley,
    <A HREF="http://www.cs.bu.edu/NSF-CRI07/">2007 NSF/CISE CRI PI Meeting</A>,
    Boston, MA, June 4-5, 2007.
</ol>
<hr>
<h1>User's Guides, HOWTOs, and miscellaneous.</h1>
<ol>
<li> <A HREF="http://www.cs.utsa.edu/~whaley/papers/atlas_install.pdf">
     ATLAS Installation Guide</A>.
<li> <a HREF="http://math-atlas.sourceforge.net/devel/atlas_contrib/assembly.html">
"Some notes on using assembly"</a>, by R. Clint Whaley.

<li> <a HREF="http://www.cs.utsa.edu/~whaley/papers/atlas_contrib.ps">
"A Guide to User Contribution to ATLAS"</a>, by R. Clint Whaley.  Also available
online as <a HREF="http://math-atlas.sourceforge.net/devel/atlas_contrib/">
html</a>.

<li> <a HREF="http://www.cs.utsa.edu/~whaley/papers/atlas_devel.ps">
"A Collaborative Guide to ATLAS Development"</a>, 
by R. Clint Whaley and Peter Soendergaard.  Also available
online as <a HREF="http://math-atlas.sourceforge.net/devel/atlas_devel/">
html</a>.

<li> <a HREF="http://www.cs.utsa.edu/~whaley/extract/Extract400.ps">
"A User's Guide to Extract"</a>, 
by R. Clint Whaley.  Also available
online as <a HREF="http://www.cs.utsa.edu/~whaley/EXTRACT/UG4/Extract.html">
html</a>.

<li> <a HREF="http://www.netlib.org/lapack/lawns/lawn137.ps">
"Installation Guide and Design of the HPF 1.1 interface to ScaLAPACK, SLHPF"</a>
by L. S. Blackford, J. J. Dongarra, C. A. Papadopoulos, and R. C. Whaley.
August, 1998.

<li><A HREF="http://www.netlib.org/lapack/lawns/lawn136.ps">
"ScaLAPACK Evaluation and Performance at the DoD MSRCs"</a>
by L. S. Blackford and R. C. Whaley. UT-CS-98.388, April 1998.

<li> <a HREF="http://www.netlib.org/blacs/blacs_install.ps">
"Installation Guide for the BLACS and its Test Suite"</a> by R. Clint Whaley.

<li> <a HREF="http://www.netlib.org/lapack/lawns/lawn94.ps">
"A User's Guide to the BLACS v1.1"</a>,
by J. Dongarra and R. C. Whaley".  March, 1995 (last updated, May 5, 1997).

<li> <a HREF="http://www.netlib.org/lapack/lawns/lawn93.ps">
"Installation Guide for ScaLAPACK"</a>
by J. Choi, J. Demmel, I. Dhillon, J. Dongarra, S. Ostrouchov,
   A. Petitet, K. Stanley, D. Walker, and R. C. Whaley.  March, 1995.

<li> <a HREF="http://www.cs.utsa.edu/~whaley/papers/BlacsMpiInSL.ps">
"Using BLACS and MPI in ScaLAPACK"</a> by R. Clint Whaley.

<li> <a HREF="http://www.cs.utsa.edu/~whaley/papers/MpiBlacsIss.ps">
"Outstanding Issues in the MPIBLACS"</a> by R. Clint Whaley.

<li> <a HREF="http://www.cs.utsa.edu/~whaley/papers/MpiProp.ps">
"Some Plebian Extensions to MPI"</a> by R. Clint Whaley.
</ol>

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<center>
<a HREF="http://www.cs.utsa.edu/~whaley/">Back to homepage</a>
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