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distrib > Fedora > 18 > x86_64 > by-pkgid > f236c73b709ce9e0496a4ae5e9ba4493 > files

R-Rsamtools-1.12.0-1.fc18.i686.rpm

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Files

drwxr-xr-x	4096	root	root	/usr/lib/R/library/Rsamtools
-rw-r--r--	1192	root	root	/usr/lib/R/library/Rsamtools/DESCRIPTION
-rw-r--r--	2214	root	root	/usr/lib/R/library/Rsamtools/INDEX
-rw-r--r--	1155	root	root	/usr/lib/R/library/Rsamtools/LICENSE
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Rsamtools/Meta
-rw-r--r--	1365	root	root	/usr/lib/R/library/Rsamtools/NAMESPACE
-rw-r--r--	6963	root	root	/usr/lib/R/library/Rsamtools/NEWS
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Rsamtools/R
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Rsamtools/doc
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Rsamtools/extdata
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Rsamtools/help
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Rsamtools/html
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Rsamtools/libs
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Rsamtools/scripts
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Rsamtools/unitTests
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Rsamtools/usretc
-rw-r--r--	2824	root	root	/usr/lib/R/library/Rsamtools/Meta/Rd.rds
-rw-r--r--	2933	root	root	/usr/lib/R/library/Rsamtools/Meta/hsearch.rds
-rw-r--r--	2072	root	root	/usr/lib/R/library/Rsamtools/Meta/links.rds
-rw-r--r--	730	root	root	/usr/lib/R/library/Rsamtools/Meta/nsInfo.rds
-rw-r--r--	1235	root	root	/usr/lib/R/library/Rsamtools/Meta/package.rds
-rw-r--r--	278	root	root	/usr/lib/R/library/Rsamtools/Meta/vignette.rds
-rw-r--r--	1056	root	root	/usr/lib/R/library/Rsamtools/R/Rsamtools
-rw-r--r--	366379	root	root	/usr/lib/R/library/Rsamtools/R/Rsamtools.rdb
-rw-r--r--	5903	root	root	/usr/lib/R/library/Rsamtools/R/Rsamtools.rdx
-rw-r--r--	9445	root	root	/usr/lib/R/library/Rsamtools/doc/Rsamtools-Overview.R
-rw-r--r--	20475	root	root	/usr/lib/R/library/Rsamtools/doc/Rsamtools-Overview.Rnw
-rw-r--r--	188355	root	root	/usr/lib/R/library/Rsamtools/doc/Rsamtools-Overview.pdf
-rw-r--r--	3646	root	root	/usr/lib/R/library/Rsamtools/doc/Rsamtools-UsingCLibraries.Rnw
-rw-r--r--	97362	root	root	/usr/lib/R/library/Rsamtools/doc/Rsamtools-UsingCLibraries.pdf
-rw-r--r--	1662	root	root	/usr/lib/R/library/Rsamtools/doc/index.html
-rw-r--r--	20480	root	root	/usr/lib/R/library/Rsamtools/extdata/CaffeineTxdb.sqlite
-rw-r--r--	176	root	root	/usr/lib/R/library/Rsamtools/extdata/ce2dict1.fa
-rw-r--r--	112	root	root	/usr/lib/R/library/Rsamtools/extdata/ce2dict1.fa.fai
-rw-r--r--	126539	root	root	/usr/lib/R/library/Rsamtools/extdata/ex1.bam
-rw-r--r--	72	root	root	/usr/lib/R/library/Rsamtools/extdata/ex1.bam.bai
-rw-r--r--	74700	root	root	/usr/lib/R/library/Rsamtools/extdata/ex1.bcf
-rw-r--r--	77	root	root	/usr/lib/R/library/Rsamtools/extdata/ex1.bcf.bci
-rw-r--r--	559422	root	root	/usr/lib/R/library/Rsamtools/extdata/ex1.sam
-rw-r--r--	3778	root	root	/usr/lib/R/library/Rsamtools/extdata/example.gtf.gz
-rw-r--r--	259	root	root	/usr/lib/R/library/Rsamtools/extdata/example.gtf.gz.tbi
-rw-r--r--	333	root	root	/usr/lib/R/library/Rsamtools/extdata/example_from_SAM_Spec.bam
-rw-r--r--	96	root	root	/usr/lib/R/library/Rsamtools/extdata/example_from_SAM_Spec.bam.bai
-rw-r--r--	322	root	root	/usr/lib/R/library/Rsamtools/extdata/example_from_SAM_Spec.sam
-rw-r--r--	1663483	root	root	/usr/lib/R/library/Rsamtools/extdata/olaps.Rda
-rw-r--r--	138598	root	root	/usr/lib/R/library/Rsamtools/extdata/pileup.txt
-rw-r--r--	31	root	root	/usr/lib/R/library/Rsamtools/extdata/samtools-github.txt
-rw-r--r--	2808	root	root	/usr/lib/R/library/Rsamtools/extdata/slxMaq09_urls.txt
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Rsamtools/extdata/tophat
-rw-r--r--	36	root	root	/usr/lib/R/library/Rsamtools/extdata/tophat/README
-rw-r--r--	36039	root	root	/usr/lib/R/library/Rsamtools/extdata/tophat/accepted_hits.sam
-rw-r--r--	4381	root	root	/usr/lib/R/library/Rsamtools/extdata/tophat/coverage.wig
-rw-r--r--	196	root	root	/usr/lib/R/library/Rsamtools/extdata/tophat/junctions.bed
-rw-r--r--	10333	root	root	/usr/lib/R/library/Rsamtools/help/AnIndex
-rw-r--r--	160978	root	root	/usr/lib/R/library/Rsamtools/help/Rsamtools.rdb
-rw-r--r--	779	root	root	/usr/lib/R/library/Rsamtools/help/Rsamtools.rdx
-rw-r--r--	2097	root	root	/usr/lib/R/library/Rsamtools/help/aliases.rds
-rw-r--r--	344	root	root	/usr/lib/R/library/Rsamtools/help/paths.rds
-rw-r--r--	34757	root	root	/usr/lib/R/library/Rsamtools/html/00Index.html
-rw-r--r--	17819	root	root	/usr/lib/R/library/Rsamtools/html/BamFile-class.html
-rw-r--r--	2939	root	root	/usr/lib/R/library/Rsamtools/html/BamSampler-class.html
-rw-r--r--	13739	root	root	/usr/lib/R/library/Rsamtools/html/BamViews-class.html
-rw-r--r--	4812	root	root	/usr/lib/R/library/Rsamtools/html/BcfFile-class.html
-rw-r--r--	6918	root	root	/usr/lib/R/library/Rsamtools/html/FaFile-class.html
-rw-r--r--	4666	root	root	/usr/lib/R/library/Rsamtools/html/PileupFiles-class.html
-rw-r--r--	7454	root	root	/usr/lib/R/library/Rsamtools/html/PileupParam-class.html
-rw-r--r--	1179	root	root	/usr/lib/R/library/Rsamtools/html/R.css
-rw-r--r--	1694	root	root	/usr/lib/R/library/Rsamtools/html/Rsamtools-package.html
-rw-r--r--	3248	root	root	/usr/lib/R/library/Rsamtools/html/RsamtoolsFile-class.html
-rw-r--r--	2610	root	root	/usr/lib/R/library/Rsamtools/html/RsamtoolsFileList-class.html
-rw-r--r--	11670	root	root	/usr/lib/R/library/Rsamtools/html/ScanBamParam-class.html
-rw-r--r--	5014	root	root	/usr/lib/R/library/Rsamtools/html/ScanBcfParam-class.html
-rw-r--r--	6616	root	root	/usr/lib/R/library/Rsamtools/html/TabixFile-class.html
-rw-r--r--	4756	root	root	/usr/lib/R/library/Rsamtools/html/applyPileups.html
-rw-r--r--	725	root	root	/usr/lib/R/library/Rsamtools/html/defunct.html
-rw-r--r--	837	root	root	/usr/lib/R/library/Rsamtools/html/deprecated.html
-rw-r--r--	11516	root	root	/usr/lib/R/library/Rsamtools/html/findMateAlignment.html
-rw-r--r--	1698	root	root	/usr/lib/R/library/Rsamtools/html/headerTabix.html
-rw-r--r--	3163	root	root	/usr/lib/R/library/Rsamtools/html/indexTabix.html
-rw-r--r--	2830	root	root	/usr/lib/R/library/Rsamtools/html/quickCountBam.html
-rw-r--r--	12464	root	root	/usr/lib/R/library/Rsamtools/html/readBamGappedAlignments.html
-rw-r--r--	3652	root	root	/usr/lib/R/library/Rsamtools/html/readPileup.html
-rw-r--r--	12069	root	root	/usr/lib/R/library/Rsamtools/html/scanBam.html
-rw-r--r--	5517	root	root	/usr/lib/R/library/Rsamtools/html/scanBcf.html
-rw-r--r--	3553	root	root	/usr/lib/R/library/Rsamtools/html/scanFa.html
-rw-r--r--	2055	root	root	/usr/lib/R/library/Rsamtools/html/scanTabix.html
-rw-r--r--	1605	root	root	/usr/lib/R/library/Rsamtools/html/seqnamesTabix.html
-rw-r--r--	2160	root	root	/usr/lib/R/library/Rsamtools/html/zip.html
-rwxr-xr-x	192588	root	root	/usr/lib/R/library/Rsamtools/libs/Rsamtools.so
-rw-r--r--	2992	root	root	/usr/lib/R/library/Rsamtools/scripts/BamViews-1000g.R
-rw-r--r--	998	root	root	/usr/lib/R/library/Rsamtools/scripts/features.R
-rw-r--r--	3386	root	root	/usr/lib/R/library/Rsamtools/scripts/readAligned_prototype.R
-rw-r--r--	763	root	root	/usr/lib/R/library/Rsamtools/scripts/remote_test.R
-rwxr-xr-x	997	root	root	/usr/lib/R/library/Rsamtools/scripts/update-samtools.sh
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Rsamtools/unitTests/cases
-rw-r--r--	1698	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_BamFile.R
-rw-r--r--	1062	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_BamSampler.R
-rw-r--r--	6584	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_BamViews.R
-rw-r--r--	3976	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_BcfFile.R
-rw-r--r--	2758	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_FaFile.R
-rw-r--r--	3052	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_TabixFile.R
-rw-r--r--	6883	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_applyPileups.R
-rw-r--r--	549	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_asBam.R
-rw-r--r--	11393	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_bam.R
-rw-r--r--	1631	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_bam_count.R
-rw-r--r--	304	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_bam_header.R
-rw-r--r--	408	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_compression.R
-rw-r--r--	1962	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_normalize_RangesList.R
-rw-r--r--	3930	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_readAligned.R
-rw-r--r--	2379	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_readBamGAlignmentsList.R
-rw-r--r--	1669	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_readBamGappedAlignments.R
-rw-r--r--	1175	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_readPileup.R
-rw-r--r--	343	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_scanBamFlag.R
-rw-r--r--	710	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_sortBam_test.R
-rw-r--r--	392	root	root	/usr/lib/R/library/Rsamtools/unitTests/test_utilities.R
-rw-r--r--	114590	root	root	/usr/lib/R/library/Rsamtools/unitTests/cases/ex1.sam.gz
-rw-r--r--	126539	root	root	/usr/lib/R/library/Rsamtools/unitTests/cases/ex1_noindex.bam
-rw-r--r--	42031	root	root	/usr/lib/R/library/Rsamtools/unitTests/cases/ex1_shuf1000.bam
-rw-r--r--	72	root	root	/usr/lib/R/library/Rsamtools/unitTests/cases/ex1_shuf1000.bam.bai
-rw-r--r--	155405	root	root	/usr/lib/R/library/Rsamtools/unitTests/cases/ex1_unsort.bam
-rw-r--r--	1020	root	root	/usr/lib/R/library/Rsamtools/unitTests/cases/no_SAMPLE_header.vcf
-rw-r--r--	807	root	root	/usr/lib/R/library/Rsamtools/unitTests/cases/no_header_line.vcf
-rw-r--r--	1608	root	root	/usr/lib/R/library/Rsamtools/unitTests/cases/pileup-no-stars.txt
-rw-r--r--	246	root	root	/usr/lib/R/library/Rsamtools/unitTests/cases/plp_refskip.bam
-rw-r--r--	96	root	root	/usr/lib/R/library/Rsamtools/unitTests/cases/plp_refskip.bam.bai
-rw-r--r--	364	root	root	/usr/lib/R/library/Rsamtools/usretc/Rsamtools.mk