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distrib > Fedora > 14 > i386 > media > os > by-pkgid > 3ec156d8b85e73dad7df9d48c9d88e1d > files

R-Biostrings-2.16.9-1.fc14.i686.rpm

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Files

drwxr-xr-x	4096	root	root	/usr/lib/R/library/Biostrings
-rw-r--r--	2231	root	root	/usr/lib/R/library/Biostrings/DESCRIPTION
-rw-r--r--	5582	root	root	/usr/lib/R/library/Biostrings/INDEX
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Biostrings/Meta
-rw-r--r--	11775	root	root	/usr/lib/R/library/Biostrings/NAMESPACE
-rw-r--r--	17344	root	root	/usr/lib/R/library/Biostrings/NEWS
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Biostrings/R
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Biostrings/UnitTests
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Biostrings/data
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Biostrings/doc
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Biostrings/extdata
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Biostrings/help
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Biostrings/html
drwxr-xr-x	4096	root	root	/usr/lib/R/library/Biostrings/libs
-rw-r--r--	8080	root	root	/usr/lib/R/library/Biostrings/Meta/Rd.rds
-rw-r--r--	318	root	root	/usr/lib/R/library/Biostrings/Meta/data.rds
-rw-r--r--	8306	root	root	/usr/lib/R/library/Biostrings/Meta/hsearch.rds
-rw-r--r--	6611	root	root	/usr/lib/R/library/Biostrings/Meta/links.rds
-rw-r--r--	2442	root	root	/usr/lib/R/library/Biostrings/Meta/nsInfo.rds
-rw-r--r--	1599	root	root	/usr/lib/R/library/Biostrings/Meta/package.rds
-rw-r--r--	588	root	root	/usr/lib/R/library/Biostrings/Meta/vignette.rds
-rw-r--r--	384	root	root	/usr/lib/R/library/Biostrings/R/Biostrings
-rw-r--r--	813868	root	root	/usr/lib/R/library/Biostrings/R/Biostrings.rdb
-rw-r--r--	14660	root	root	/usr/lib/R/library/Biostrings/R/Biostrings.rdx
-rw-r--r--	1893	root	root	/usr/lib/R/library/Biostrings/UnitTests/runit-XString.R
-rw-r--r--	8250	root	root	/usr/lib/R/library/Biostrings/UnitTests/runit-matchDNAPattern.R.FIXME
-rw-r--r--	4411	root	root	/usr/lib/R/library/Biostrings/UnitTests/runit-matchPDict.R
-rw-r--r--	9619	root	root	/usr/lib/R/library/Biostrings/UnitTests/runit-pairwiseAlignment.R
-rw-r--r--	712	root	root	/usr/lib/R/library/Biostrings/data/BLOSUM100.rda
-rw-r--r--	635	root	root	/usr/lib/R/library/Biostrings/data/BLOSUM45.rda
-rw-r--r--	628	root	root	/usr/lib/R/library/Biostrings/data/BLOSUM50.rda
-rw-r--r--	620	root	root	/usr/lib/R/library/Biostrings/data/BLOSUM62.rda
-rw-r--r--	648	root	root	/usr/lib/R/library/Biostrings/data/BLOSUM80.rda
-rw-r--r--	4533	root	root	/usr/lib/R/library/Biostrings/data/HNF4alpha.rda
-rw-r--r--	673	root	root	/usr/lib/R/library/Biostrings/data/PAM120.rda
-rw-r--r--	635	root	root	/usr/lib/R/library/Biostrings/data/PAM250.rda
-rw-r--r--	767	root	root	/usr/lib/R/library/Biostrings/data/PAM30.rda
-rw-r--r--	736	root	root	/usr/lib/R/library/Biostrings/data/PAM40.rda
-rw-r--r--	740	root	root	/usr/lib/R/library/Biostrings/data/PAM70.rda
-rw-r--r--	6445	root	root	/usr/lib/R/library/Biostrings/data/phiX174Phage.rda
-rw-r--r--	37751	root	root	/usr/lib/R/library/Biostrings/data/srPhiX174.rda
-rw-r--r--	66419	root	root	/usr/lib/R/library/Biostrings/data/yeastSEQCHR1.rda
-rw-r--r--	24892	root	root	/usr/lib/R/library/Biostrings/doc/Alignments.R
-rw-r--r--	53395	root	root	/usr/lib/R/library/Biostrings/doc/Alignments.Rnw
-rw-r--r--	237404	root	root	/usr/lib/R/library/Biostrings/doc/Alignments.pdf
-rw-r--r--	3451	root	root	/usr/lib/R/library/Biostrings/doc/Biostrings2Classes.R
-rw-r--r--	8514	root	root	/usr/lib/R/library/Biostrings/doc/Biostrings2Classes.Rnw
-rw-r--r--	104219	root	root	/usr/lib/R/library/Biostrings/doc/Biostrings2Classes.pdf
-rw-r--r--	1321	root	root	/usr/lib/R/library/Biostrings/doc/DNAStringVectorization.R
-rw-r--r--	4710	root	root	/usr/lib/R/library/Biostrings/doc/DNAStringVectorization.Rnw
-rw-r--r--	89756	root	root	/usr/lib/R/library/Biostrings/doc/DNAStringVectorization.pdf
-rw-r--r--	1231	root	root	/usr/lib/R/library/Biostrings/doc/GenomeSearching.Rnw
-rw-r--r--	25735	root	root	/usr/lib/R/library/Biostrings/doc/GenomeSearching.pdf
-rw-r--r--	16695	root	root	/usr/lib/R/library/Biostrings/doc/SolexaYi2-benchmark.txt
-rw-r--r--	7996	root	root	/usr/lib/R/library/Biostrings/doc/biostDemo.Rnw.old
-rw-r--r--	884	root	root	/usr/lib/R/library/Biostrings/doc/index.html
-rw-r--r--	3525	root	root	/usr/lib/R/library/Biostrings/doc/matchprobes.R
-rw-r--r--	9887	root	root	/usr/lib/R/library/Biostrings/doc/matchprobes.Rnw
-rw-r--r--	193283	root	root	/usr/lib/R/library/Biostrings/doc/matchprobes.pdf
-rw-r--r--	257	root	root	/usr/lib/R/library/Biostrings/extdata/README
-rw-r--r--	1633	root	root	/usr/lib/R/library/Biostrings/extdata/Sc.fa
-rw-r--r--	1653	root	root	/usr/lib/R/library/Biostrings/extdata/Sp.fa
-rw-r--r--	169	root	root	/usr/lib/R/library/Biostrings/extdata/fastaEx.fa
-rw-r--r--	495	root	root	/usr/lib/R/library/Biostrings/extdata/hg18chr8_gap.txt
-rw-r--r--	667	root	root	/usr/lib/R/library/Biostrings/extdata/hg18chrY_gap.txt
-rw-r--r--	31740	root	root	/usr/lib/R/library/Biostrings/extdata/s_1_sequence.txt
-rw-r--r--	27326	root	root	/usr/lib/R/library/Biostrings/extdata/someORF.fa
-rw-r--r--	42053	root	root	/usr/lib/R/library/Biostrings/help/AnIndex
-rw-r--r--	342727	root	root	/usr/lib/R/library/Biostrings/help/Biostrings.rdb
-rw-r--r--	1784	root	root	/usr/lib/R/library/Biostrings/help/Biostrings.rdx
-rw-r--r--	6911	root	root	/usr/lib/R/library/Biostrings/help/aliases.rds
-rw-r--r--	719	root	root	/usr/lib/R/library/Biostrings/help/paths.rds
-rw-r--r--	91327	root	root	/usr/lib/R/library/Biostrings/html/00Index.html
-rw-r--r--	3088	root	root	/usr/lib/R/library/Biostrings/html/AAString-class.html
-rw-r--r--	1137	root	root	/usr/lib/R/library/Biostrings/html/AMINO_ACID_CODE.html
-rw-r--r--	4965	root	root	/usr/lib/R/library/Biostrings/html/AlignedXStringSet-class.html
-rw-r--r--	900	root	root	/usr/lib/R/library/Biostrings/html/BOC_SubjectString-class.html
-rw-r--r--	737	root	root	/usr/lib/R/library/Biostrings/html/Biostrings-internals.html
-rw-r--r--	3387	root	root	/usr/lib/R/library/Biostrings/html/DNAString-class.html
-rw-r--r--	3237	root	root	/usr/lib/R/library/Biostrings/html/GENETIC_CODE.html
-rw-r--r--	1091	root	root	/usr/lib/R/library/Biostrings/html/HNF4alpha.html
-rw-r--r--	2629	root	root	/usr/lib/R/library/Biostrings/html/IUPAC_CODE_MAP.html
-rw-r--r--	1297	root	root	/usr/lib/R/library/Biostrings/html/InDel-class.html
-rw-r--r--	3712	root	root	/usr/lib/R/library/Biostrings/html/MIndex-class.html
-rw-r--r--	6988	root	root	/usr/lib/R/library/Biostrings/html/MaskedXString-class.html
-rw-r--r--	11134	root	root	/usr/lib/R/library/Biostrings/html/PDict-class.html
-rw-r--r--	11291	root	root	/usr/lib/R/library/Biostrings/html/PairwiseAlignedXStringSet-class.html
-rw-r--r--	4341	root	root	/usr/lib/R/library/Biostrings/html/QualityScaledXStringSet-class.html
-rw-r--r--	3582	root	root	/usr/lib/R/library/Biostrings/html/RNAString-class.html
-rw-r--r--	894	root	root	/usr/lib/R/library/Biostrings/html/WCP.html
-rw-r--r--	972	root	root	/usr/lib/R/library/Biostrings/html/XKeySortedData.html
-rw-r--r--	1014	root	root	/usr/lib/R/library/Biostrings/html/XKeySortedDataList.html
-rw-r--r--	6166	root	root	/usr/lib/R/library/Biostrings/html/XString-class.html
-rw-r--r--	1784	root	root	/usr/lib/R/library/Biostrings/html/XStringPartialMatches-class.html
-rw-r--r--	1989	root	root	/usr/lib/R/library/Biostrings/html/XStringQuality-class.html
-rw-r--r--	17559	root	root	/usr/lib/R/library/Biostrings/html/XStringSet-class.html
-rw-r--r--	10300	root	root	/usr/lib/R/library/Biostrings/html/XStringSet-io.html
-rw-r--r--	2292	root	root	/usr/lib/R/library/Biostrings/html/XStringSetList-class.html
-rw-r--r--	7213	root	root	/usr/lib/R/library/Biostrings/html/XStringViews-class.html
-rw-r--r--	3168	root	root	/usr/lib/R/library/Biostrings/html/XStringViews-constructors.html
-rw-r--r--	5856	root	root	/usr/lib/R/library/Biostrings/html/align-utils.html
-rw-r--r--	2615	root	root	/usr/lib/R/library/Biostrings/html/basecontent.html
-rw-r--r--	3578	root	root	/usr/lib/R/library/Biostrings/html/chartr.html
-rw-r--r--	3820	root	root	/usr/lib/R/library/Biostrings/html/complementSeq.html
-rw-r--r--	3909	root	root	/usr/lib/R/library/Biostrings/html/dinucleotideFrequencyTest.html
-rw-r--r--	5926	root	root	/usr/lib/R/library/Biostrings/html/extractTranscripts.html
-rw-r--r--	7087	root	root	/usr/lib/R/library/Biostrings/html/findPalindromes.html
-rw-r--r--	2224	root	root	/usr/lib/R/library/Biostrings/html/gregexpr2.html
-rw-r--r--	5397	root	root	/usr/lib/R/library/Biostrings/html/injectHardMask.html
-rw-r--r--	2548	root	root	/usr/lib/R/library/Biostrings/html/letter.html
-rw-r--r--	17004	root	root	/usr/lib/R/library/Biostrings/html/letterFrequency.html
-rw-r--r--	1743	root	root	/usr/lib/R/library/Biostrings/html/longestConsecutive.html
-rw-r--r--	14972	root	root	/usr/lib/R/library/Biostrings/html/lowlevel-matching.html
-rw-r--r--	4918	root	root	/usr/lib/R/library/Biostrings/html/maskMotif.html
-rw-r--r--	4524	root	root	/usr/lib/R/library/Biostrings/html/match-utils.html
-rw-r--r--	5378	root	root	/usr/lib/R/library/Biostrings/html/matchLRPatterns.html
-rw-r--r--	22665	root	root	/usr/lib/R/library/Biostrings/html/matchPDict-exact.html
-rw-r--r--	8259	root	root	/usr/lib/R/library/Biostrings/html/matchPDict-inexact.html
-rw-r--r--	6216	root	root	/usr/lib/R/library/Biostrings/html/matchPWM.html
-rw-r--r--	10818	root	root	/usr/lib/R/library/Biostrings/html/matchPattern.html
-rw-r--r--	4130	root	root	/usr/lib/R/library/Biostrings/html/matchProbePair.html
-rw-r--r--	2546	root	root	/usr/lib/R/library/Biostrings/html/matchWCP.html
-rw-r--r--	3281	root	root	/usr/lib/R/library/Biostrings/html/matchprobes.html
-rw-r--r--	2345	root	root	/usr/lib/R/library/Biostrings/html/misc.html
-rw-r--r--	2741	root	root	/usr/lib/R/library/Biostrings/html/needwunsQS.html
-rw-r--r--	11110	root	root	/usr/lib/R/library/Biostrings/html/nucleotideFrequency.html
-rw-r--r--	10076	root	root	/usr/lib/R/library/Biostrings/html/pairwiseAlignment.html
-rw-r--r--	3304	root	root	/usr/lib/R/library/Biostrings/html/phiX174Phage.html
-rw-r--r--	2765	root	root	/usr/lib/R/library/Biostrings/html/pid.html
-rw-r--r--	2038	root	root	/usr/lib/R/library/Biostrings/html/pmatchPattern.html
-rw-r--r--	5719	root	root	/usr/lib/R/library/Biostrings/html/readFASTA.html
-rw-r--r--	6982	root	root	/usr/lib/R/library/Biostrings/html/replaceLetterAt.html
-rw-r--r--	6915	root	root	/usr/lib/R/library/Biostrings/html/reverse.html
-rw-r--r--	2702	root	root	/usr/lib/R/library/Biostrings/html/reverseSeq.html
-rw-r--r--	5314	root	root	/usr/lib/R/library/Biostrings/html/stringDist.html
-rw-r--r--	2616	root	root	/usr/lib/R/library/Biostrings/html/subXString.html
-rw-r--r--	7923	root	root	/usr/lib/R/library/Biostrings/html/substitution_matrices.html
-rw-r--r--	1750	root	root	/usr/lib/R/library/Biostrings/html/toComplex.html
-rw-r--r--	5391	root	root	/usr/lib/R/library/Biostrings/html/translate.html
-rw-r--r--	7762	root	root	/usr/lib/R/library/Biostrings/html/trimLRPatterns.html
-rw-r--r--	3269	root	root	/usr/lib/R/library/Biostrings/html/xscat.html
-rw-r--r--	1525	root	root	/usr/lib/R/library/Biostrings/html/yeastSEQCHR1.html
-rwxr-xr-x	209760	root	root	/usr/lib/R/library/Biostrings/libs/Biostrings.so